Homemade Protein Bagels with Greek Yogurt for a Quick Healthy Dessert Recipe

Craving bagels without the guilt? These easy protein bagels are the ultimate fix for health-conscious eaters who don’t want to give up their favorite carbs.

Too often, store-bought options are loaded with fillers, sugar, or empty calories. But this quick homemade version delivers protein-packed satisfaction with simple, wholesome ingredients.

High-Protein Snacking Made Simple

Homemade Protein Bagels with Greek Yogurt for a Quick Healthy Dessert Recipe - Homemade Protein Bagels pin 1 midia

These bagels use Greek yogurt as a key ingredient, making them naturally rich in protein. That gives them a light, chewy texture with none of the heaviness of traditional recipes.

Each bite delivers balance—just the right mix of carbs and protein to keep energy levels steady without the crash.

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Perfect as a mid-morning snack, quick breakfast, or pre-workout fuel-up, these protein bagels help you stay on track while satisfying your cravings.

Best of all, they don’t taste like a compromise.

Easy to Make, Easy to Love

You don’t need yeast, rising time, or special skills to pull these off. With just a handful of basic ingredients, you can go from a mixing bowl to fresh, golden bagels.

Want them extra crispy? Go with the oven method. Need something fast? The air fryer version delivers in record time.

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Either way, the result is soft inside, golden outside, and endlessly customizable.

Customizable for Every Diet

These protein bagels are already vegetarian and packed with healthy ingredients, but they can easily adapt to fit your dietary needs.

Here are a few quick tweaks:

  • Gluten-free: Use a 1:1 gluten-free flour blend plus baking powder.
  • Vegan: Swap Greek yogurt for a plant-based Greek-style yogurt and skip the egg wash or use a vegan alternative.
  • Low-fat: Use non-fat Greek yogurt and egg whites instead of whole eggs.
  • Dairy-free: Opt for coconut- or almond-based yogurts designed for baking.

You’re in control of what goes in, making these bagels perfect for families with dietary preferences or food sensitivities.

Endless Serving Ideas for Every Occasion

These bagels aren’t just for breakfast—they’re a healthy dessert hack, lunch upgrade, or post-dinner bite.

Try these fun combos:

  • Sweet style: Toasted with a smear of almond butter, honey drizzle, and fresh berries.
  • Savory twist: Add avocado, turkey slices, or an egg for a protein-rich sandwich.
  • Meal prep: Make a batch ahead of time, freeze, and reheat as needed.
  • On-the-go snack: Wrap one up and toss it in your gym bag for a satisfying, post-workout refuel.

And yes, they absolutely pair beautifully with coffee, matcha, or your favorite smoothie.

Make It Yours with Easy Toppings

Homemade Protein Bagels with Greek Yogurt for a Quick Healthy Dessert Recipe - Homemade Protein Bagels pin 2 midia

The magic of this recipe lies in its simplicity and versatility.

Brush with egg wash or an alternative to get that bakery-style finish. Then, personalize them:

  • Classic: Sesame seeds, poppy seeds, or everything bagel mix.
  • Sweet: Cinnamon sugar or crushed nuts.
  • Savory: Garlic flakes, dried herbs, or flaky sea salt.

Even without toppings, the tangy yogurt and golden crust deliver a flavor that’s rich yet refreshing.

Once you’ve made these, you’ll be hooked.

Easy protein bagels aren’t just another healthy dessert trend—they’re a fast, reliable, and delicious staple you’ll want to make again and again.

Homemade Protein Bagels with Greek Yogurt for a Quick Healthy Dessert Recipe - Homemade Protein Bagels midia

Homemade Protein Bagels for a Quick Healthy Dessert Recipe

These healthy dessert protein bagels are a high-protein twist on classic bagels, made with Greek yogurt for a chewy texture and packed with nutritious flavor.
Prep Time 10 minutes
Cook Time 20 minutes
Total Time 30 minutes
Course Dessert
Cuisine American, Healthy, High-protein
Servings 4 bagels
Calories 217.8 kcal

Equipment

  • Oven
  • Air Fryer

Ingredients
  

  • 1 ⅔ cups all-purpose flour (or use self-rising flour and omit baking powder)
  • cup Greek yogurt (full or low fat)low-fat
  • 1 ½ tsp baking powder
  • ½ to 1 tsp Kosher salt adjust to taste
  • 1 egg or one egg white, for brushing
  • Seeds of choice optional, for topping

Instructions
 

Preheat the Oven or Air Fryer:

  • Oven: 375°F
  • Air Fryer: 280°F

Mix Dry Ingredients:

  • In a large bowl, combine flour, baking powder, and salt.

Add Greek Yogurt:

  • Stir in the yogurt until a shaggy dough forms. Adjust as needed—add flour if too sticky, or more yogurt if dry.

Knead the Dough:

  • Transfer to a floured surface and knead into a smooth ball. Divide into 4 equal portions.

Shape Bagels:

  • Roll each portion into a 6-inch log and form into a ring shape.

Apply Toppings:

  • Brush tops with egg wash. Sprinkle seeds if using.

Bake (Choose Method):

  • Oven: Place bagels on a parchment-lined baking sheet and bake for 20–25 minutes until golden.
  • Air Fryer: Place 2–3 bagels in the basket with space between. Air fry for 15–20 minutes.

Cool & Serve:

  • Let the bagels cool for at least 15 minutes before serving.

Notes

Low-Fat Variation:
  • ⅔ cup non-fat Greek yogurt
  • 1 egg white (for brushing)
Dairy-Free Variation:
  • ⅔ cup dairy-free Greek-style yogurt
  • Vegan egg substitute or plant milk for brushing
Gluten-Free Adaptation:
  • 1 ⅔ cups gluten-free all-purpose flour
  • 1 ½ tsp baking powder (if not using self-rising)

Nutrition

Serving: 1bagelCalories: 217.8kcalCarbohydrates: 37.3gProtein: 13.7gFat: 1.7g
Keyword easy Greek yogurt bagels, healthy breakfast bagel idea, healthy dessert alternatives, healthy dessert bagels, high protein healthy snacks, High-protein bagel recipe, low-fat protein bagels
Tried this recipe?Let us know how it was!
davin
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Davin is a jack-of-all-trades but has professional training and experience in various home and garden subjects. He leans on other experts when needed and edits and fact-checks all articles.